PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010539870.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family DBB
Protein Properties Length: 329aa    MW: 36356.8 Da    PI: 7.134
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010539870.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.25.3e-06334435
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHk 35
                     kC+ ++++e++  C  ++  lC  C    H+
  XP_010539870.1  3 IKCDVCNKEEASVLCIADEASLCSVCDHRVHH 34
                    58*************************99974 PP

2zf-B_box27.75.8e-095390338
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                     + C+ ++ek++ lfC +++  lC+dC   +H+   Ht
  XP_010539870.1 53 SPLCDICQEKRALLFCVQDRAILCKDCDAPIHEAneHT 90
                    689*****************************667776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.096147IPR000315B-box-type zinc finger
CDDcd000212.75E-4334No hitNo description
SMARTSM003361.9E-4447IPR000315B-box-type zinc finger
SMARTSM003361.1E-135198IPR000315B-box-type zinc finger
PROSITE profilePS501199.8265198IPR000315B-box-type zinc finger
PfamPF006432.5E-75391IPR000315B-box-type zinc finger
CDDcd000211.24E-85498No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MKIKCDVCNK EEASVLCIAD EASLCSVCDH RVHHANKLAS KHLRFSLLEP SSSPLCDICQ  60
EKRALLFCVQ DRAILCKDCD APIHEANEHT KKHDRFLLTG VKLSAESCPY KCTSDSPSSP  120
TKQDLSVPGS SISKPLIEKP APAQHSNSKI HSSSSAKPKP RVEKSAAARS KNCGDDAAAN  180
QSGCTSTISE YLIEMLPGWH VEDLLDSPVP PFGFYQNEDG VSPYMEAEFN NSSNSHISFG  240
SFPSENLGIR VPQIPQTLTS SYPNQYHSHD QNSNYTQIGS FKESVCSYVP TPNMKQQQGQ  300
NKRWLDDGVF TVPQITSPIH NNKKSRSFW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010539870.10.0PREDICTED: B-box zinc finger protein 21-like
SwissprotQ9LQZ71e-127BBX21_ARATH; B-box zinc finger protein 21
TrEMBLD7KSQ71e-127D7KSQ7_ARALL; Zinc finger (B-box type) family protein
STRINGfgenesh2_kg.2__1831__AT1G75540.11e-127(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54002748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.11e-127salt tolerance homolog2